Schira MM, Spehar B, Breakspear M, Tyler CW. The Benefits of High
Resolution fMRI for Retinotopy.
Society for Neuroscience Meeting 2007
Measuring Retinotopy in human subjects has become a standard procedure
of contemporary fMRI studies on visual cortex. Since the sheet of gray
matter at the occipital pole is roughly 2-3mm thick, a typical fMRI
voxel of 3 x 3 x 3 mm will contain signal from a mixture of gray
matter, white matter or cerebrospinal liquid. Many voxels will sample
from the two opposite sides of a sulcus, thereby containing signal
from two locations close in 3D space, but distant locations on the
cortical surface (partial voluming). Higher resolution protocols are
usually avoided because they are expected to entail a worse signal to
noise ratio.
Methods: We measured retinotopy with a resolution of 1.2x1.2x1.2 mm
voxel size (29 slices; EPI matrix size of 176x176; FOV 209mm; FLIP
angle 90deg; TE 36ms; repetition time 3s, SENSE factor 2.0) with a 3T
Philips Achieva X Series and an 8 channel head coil. We also collected
T1-weighted 3D structural scans at 0.75mm resolution and carefully
segmented them for accurate gray-white segmentation. We used the
Stanford Vista Tools for flattening and analyzing these data.
Results: Use of high resolution EPI sequences resulted in a
substantial resolution of the gyral structure, providing detailed
mutual information for precise alignment between the functional and
structural data. We resolve different mean luminance values for gray
(raw luminance value of an example voxel: mean 82 std of 2.6) and
neighboring white mater voxels (64 std 3.1) in our functional (T2
weighted) scans. Typical BOLD modulation was in the order of 8-12%
(9%-14% peak to peak) in single voxels. Figure 1 shows the response
(averaged across five runs) of two single voxels 1.2 mm apart in 3D
space, but responding to different eccentricities of the cyclic
retinotopic stimuli (color coding on the right).
Conclusion: We find that BOLD modulation for retinotopy stimuli within
voxels increases with resolution, while reducing confounding crosstalk
of measured signal across sulci. This is a necessary prerequisite for
detailed analysis of flat maps of visual cortex.